cdlib.evaluation.geometric_accuracy

cdlib.evaluation.geometric_accuracy(first_partition: object, second_partition: object) → MatchingResult

This function calculates the geometric accuracy between two (overlapping) clusterings.

Parameters:

• first_partition – NodeClustering object

• second_partition – NodeClustering object

Returns:

MatchingResult object

Example:

>>> from cdlib import evaluation, algorithms
>>> import networkx as nx
>>> g = nx.karate_club_graph()
>>> louvain_communities = algorithms.louvain(g)
>>> leiden_communities = algorithms.leiden(g)
>>> evaluation.geometric_accuracy(louvain_communities,leiden_communities)

Reference:

Tamás Nepusz, Haiyuan Yu, and Alberto Paccanaro. Detecting overlapping protein complexes in protein-protein interaction networks. Nature Methods, 9(5):471–472, 2012.

Note

The function requires the clusim library to be installed. You can install it via pip: pip install clusim