CDlib
Overview
Goals
EU H2020
Installing CDlib
Optional Dependencies
PyPi package
Advanced
Optional Dependencies (Conda package)
Quick Start
Tutorial
FAQ
Reference
Community Objects
Node Clustering
Fuzzy Node Clustering
Attributed Node Clustering
Biparite Node Clustering
Edge Clustering
Temporal Clustering
Using Clustering objects with your own algorithm
Community Discovery algorithms
Static Community Discovery
Dynamic Community Discovery
Ensemble Methods
Summary
Evaluation and Benchmarking
Internal Evaluation: Fitness scores
External Evaluation: Partition Comparisons
Synthetic Benchmarks
Networks With Annotated Communities
Ranking Algorithms
Visual Analytics
Network Visualization
Analytics plots
Input-Output
CSV format
JSON format
Utilities
Graph Transformation
Identifier mapping
Bibliography
Algorithms
Evaluation measures
Researches using CDlib
CDlib
Docs
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Index
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Index
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A
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B
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C
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D
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E
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F
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G
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H
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I
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K
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L
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M
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N
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O
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P
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R
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S
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T
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U
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V
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W
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X
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Z
_
__init__() (BoolParameter method)
(FitnessResult method)
(MatchingResult method)
(Parameter method)
A
add_clustering() (TemporalClustering method)
add_matching() (TemporalClustering method)
adjusted_mutual_information() (AttrNodeClustering method)
(BiNodeClustering method)
(FuzzyNodeClustering method)
(NodeClustering method)
(in module cdlib.evaluation)
adjusted_rand_index() (AttrNodeClustering method)
(BiNodeClustering method)
(FuzzyNodeClustering method)
(NodeClustering method)
(in module cdlib.evaluation)
agdl() (in module cdlib.algorithms)
angel() (in module cdlib.algorithms)
aslpaw() (in module cdlib.algorithms)
async_fluid() (in module cdlib.algorithms)
AttrNodeClustering (class in cdlib)
available_ground_truths() (in module cdlib.datasets)
available_networks() (in module cdlib.datasets)
average_internal_degree() (AttrNodeClustering method)
(BiNodeClustering method)
(FuzzyNodeClustering method)
(NodeClustering method)
(in module cdlib.evaluation)
avg_distance() (AttrNodeClustering method)
(BiNodeClustering method)
(FuzzyNodeClustering method)
(NodeClustering method)
(in module cdlib.evaluation)
avg_embeddedness() (AttrNodeClustering method)
(BiNodeClustering method)
(FuzzyNodeClustering method)
(NodeClustering method)
(in module cdlib.evaluation)
avg_odf() (AttrNodeClustering method)
(BiNodeClustering method)
(FuzzyNodeClustering method)
(NodeClustering method)
(in module cdlib.evaluation)
avg_transitivity() (AttrNodeClustering method)
(BiNodeClustering method)
(FuzzyNodeClustering method)
(NodeClustering method)
(in module cdlib.evaluation)
B
bayan() (in module cdlib.algorithms)
belief() (in module cdlib.algorithms)
bimlpa() (in module cdlib.algorithms)
BiNodeClustering (class in cdlib)
bonferroni_post_hoc() (ComparisonRanking method)
(FitnessRanking method)
BoolParameter (class in cdlib.ensemble)
C
cdlib.algorithms (module)
,
[1]
,
[2]
cdlib.benchmark (module)
cdlib.datasets (module)
cdlib.ensemble (module)
cdlib.evaluation (module)
,
[1]
,
[2]
cdlib.readwrite (module)
cdlib.utils (module)
cdlib.viz (module)
clustering_stability_trend() (TemporalClustering method)
coach() (in module cdlib.algorithms)
community_matching() (TemporalClustering method)
ComparisonRanking (class in cdlib.evaluation)
condor() (in module cdlib.algorithms)
conductance() (AttrNodeClustering method)
(BiNodeClustering method)
(FuzzyNodeClustering method)
(NodeClustering method)
(in module cdlib.evaluation)
conga() (in module cdlib.algorithms)
congo() (in module cdlib.algorithms)
convert_graph_formats() (in module cdlib.utils)
core_expansion() (in module cdlib.algorithms)
cpm() (in module cdlib.algorithms)
CPM_Bipartite() (in module cdlib.algorithms)
cut_ratio() (AttrNodeClustering method)
(BiNodeClustering method)
(FuzzyNodeClustering method)
(NodeClustering method)
(in module cdlib.evaluation)
D
dcs() (in module cdlib.algorithms)
demon() (in module cdlib.algorithms)
der() (in module cdlib.algorithms)
dpclus() (in module cdlib.algorithms)
E
ebgc() (in module cdlib.algorithms)
EdgeClustering (class in cdlib)
edges_inside() (AttrNodeClustering method)
(BiNodeClustering method)
(FuzzyNodeClustering method)
(NodeClustering method)
(in module cdlib.evaluation)
ego_networks() (in module cdlib.algorithms)
eigenvector() (in module cdlib.algorithms)
em() (in module cdlib.algorithms)
endntm() (in module cdlib.algorithms)
erdos_renyi_modularity() (AttrNodeClustering method)
(BiNodeClustering method)
(FuzzyNodeClustering method)
(NodeClustering method)
(in module cdlib.evaluation)
eva() (in module cdlib.algorithms)
expansion() (AttrNodeClustering method)
(BiNodeClustering method)
(FuzzyNodeClustering method)
(NodeClustering method)
(in module cdlib.evaluation)
F
f1() (AttrNodeClustering method)
(BiNodeClustering method)
(FuzzyNodeClustering method)
(NodeClustering method)
(in module cdlib.evaluation)
fetch_ground_truth_data() (in module cdlib.datasets)
fetch_network_data() (in module cdlib.datasets)
fetch_network_ground_truth() (in module cdlib.datasets)
FitnessRanking (class in cdlib.evaluation)
FitnessResult (class in cdlib.evaluation)
flake_odf() (AttrNodeClustering method)
(BiNodeClustering method)
(FuzzyNodeClustering method)
(NodeClustering method)
(in module cdlib.evaluation)
fraction_over_median_degree() (AttrNodeClustering method)
(BiNodeClustering method)
(FuzzyNodeClustering method)
(NodeClustering method)
(in module cdlib.evaluation)
frc_fgsn() (in module cdlib.algorithms)
friedman_ranking() (ComparisonRanking method)
(FitnessRanking method)
FuzzyNodeClustering (class in cdlib)
G
ga() (in module cdlib.algorithms)
gdmp2() (in module cdlib.algorithms)
get_clustering_at() (TemporalClustering method)
get_community() (TemporalClustering method)
get_description() (AttrNodeClustering method)
(BiNodeClustering method)
(EdgeClustering method)
(FuzzyNodeClustering method)
(NodeClustering method)
get_explicit_community_match() (TemporalClustering method)
get_observation_ids() (TemporalClustering method)
girvan_newman() (in module cdlib.algorithms)
graph_entropy() (in module cdlib.algorithms)
greedy_modularity() (in module cdlib.algorithms)
grid_execution() (in module cdlib.ensemble)
grid_search() (in module cdlib.ensemble)
GRP() (in module cdlib.benchmark)
H
has_explicit_match() (TemporalClustering method)
head_tail() (in module cdlib.algorithms)
hierarchical_link_community() (in module cdlib.algorithms)
hub_dominance() (AttrNodeClustering method)
(BiNodeClustering method)
(FuzzyNodeClustering method)
(NodeClustering method)
(in module cdlib.evaluation)
I
ilouvain() (in module cdlib.algorithms)
infomap() (in module cdlib.algorithms)
infomap_bipartite() (in module cdlib.algorithms)
internal_edge_density() (AttrNodeClustering method)
(BiNodeClustering method)
(FuzzyNodeClustering method)
(NodeClustering method)
(in module cdlib.evaluation)
ipca() (in module cdlib.algorithms)
K
kclique() (in module cdlib.algorithms)
kcut() (in module cdlib.algorithms)
L
label_propagation() (in module cdlib.algorithms)
lais2() (in module cdlib.algorithms)
leiden() (in module cdlib.algorithms)
lemon() (in module cdlib.algorithms)
lfm() (in module cdlib.algorithms)
LFR() (in module cdlib.benchmark)
lifecycle_polytree() (TemporalClustering method)
link_modularity() (AttrNodeClustering method)
(BiNodeClustering method)
(FuzzyNodeClustering method)
(NodeClustering method)
(in module cdlib.evaluation)
louvain() (in module cdlib.algorithms)
lpam() (in module cdlib.algorithms)
lpanni() (in module cdlib.algorithms)
lswl() (in module cdlib.algorithms)
lswl_plus() (in module cdlib.algorithms)
M
markov_clustering() (in module cdlib.algorithms)
MatchingResult (class in cdlib.evaluation)
max_odf() (AttrNodeClustering method)
(BiNodeClustering method)
(FuzzyNodeClustering method)
(NodeClustering method)
(in module cdlib.evaluation)
mcode() (in module cdlib.algorithms)
mod_m() (in module cdlib.algorithms)
mod_r() (in module cdlib.algorithms)
modularity_density() (AttrNodeClustering method)
(BiNodeClustering method)
(FuzzyNodeClustering method)
(NodeClustering method)
(in module cdlib.evaluation)
modularity_overlap() (AttrNodeClustering method)
(BiNodeClustering method)
(FuzzyNodeClustering method)
(NodeClustering method)
(in module cdlib.evaluation)
multicom() (in module cdlib.algorithms)
N
newman_girvan_modularity() (AttrNodeClustering method)
(BiNodeClustering method)
(FuzzyNodeClustering method)
(NodeClustering method)
(in module cdlib.evaluation)
nf1() (AttrNodeClustering method)
(BiNodeClustering method)
(FuzzyNodeClustering method)
(NodeClustering method)
(in module cdlib.evaluation)
node_perception() (in module cdlib.algorithms)
NodeClustering (class in cdlib)
normalized_cut() (AttrNodeClustering method)
(BiNodeClustering method)
(FuzzyNodeClustering method)
(NodeClustering method)
(in module cdlib.evaluation)
normalized_mutual_information() (AttrNodeClustering method)
(BiNodeClustering method)
(FuzzyNodeClustering method)
(NodeClustering method)
(in module cdlib.evaluation)
nx_node_integer_mapping() (in module cdlib.utils)
O
omega() (AttrNodeClustering method)
(BiNodeClustering method)
(FuzzyNodeClustering method)
(NodeClustering method)
(in module cdlib.evaluation)
overlapping_normalized_mutual_information_LFK() (AttrNodeClustering method)
(BiNodeClustering method)
(FuzzyNodeClustering method)
(NodeClustering method)
(in module cdlib.evaluation)
overlapping_normalized_mutual_information_MGH() (AttrNodeClustering method)
(BiNodeClustering method)
(FuzzyNodeClustering method)
(NodeClustering method)
(in module cdlib.evaluation)
overlapping_seed_set_expansion() (in module cdlib.algorithms)
P
Parameter (class in cdlib.ensemble)
paris() (in module cdlib.algorithms)
percomvc() (in module cdlib.algorithms)
plot_com_properties_relation() (in module cdlib.viz)
plot_com_stat() (in module cdlib.viz)
plot_community_graph() (in module cdlib.viz)
plot_network_clusters() (in module cdlib.viz)
plot_scoring() (in module cdlib.viz)
plot_sim_matrix() (in module cdlib.viz)
pool() (in module cdlib.ensemble)
pool_grid_filter() (in module cdlib.ensemble)
PP() (in module cdlib.benchmark)
principled_clustering() (in module cdlib.algorithms)
purity() (AttrNodeClustering method)
(in module cdlib.evaluation)
pycombo() (in module cdlib.algorithms)
R
r_spectral_clustering() (in module cdlib.algorithms)
random_search() (in module cdlib.ensemble)
rank() (ComparisonRanking method)
(FitnessRanking method)
rb_pots() (in module cdlib.algorithms)
rber_pots() (in module cdlib.algorithms)
RDyn() (in module cdlib.benchmark)
read_community_csv() (in module cdlib.readwrite)
read_community_json() (in module cdlib.readwrite)
remap_node_communities() (in module cdlib.utils)
ricci_community() (in module cdlib.algorithms)
RPG() (in module cdlib.benchmark)
S
SBM() (in module cdlib.benchmark)
sbm_dl() (in module cdlib.algorithms)
sbm_dl_nested() (in module cdlib.algorithms)
scaled_density() (AttrNodeClustering method)
(BiNodeClustering method)
(FuzzyNodeClustering method)
(NodeClustering method)
(in module cdlib.evaluation)
scan() (in module cdlib.algorithms)
siblinarity_antichain() (in module cdlib.algorithms)
significance() (AttrNodeClustering method)
(BiNodeClustering method)
(FuzzyNodeClustering method)
(NodeClustering method)
(in module cdlib.evaluation)
significance_communities() (in module cdlib.algorithms)
size() (AttrNodeClustering method)
(BiNodeClustering method)
(FuzzyNodeClustering method)
(NodeClustering method)
(in module cdlib.evaluation)
slpa() (in module cdlib.algorithms)
spectral() (in module cdlib.algorithms)
spinglass() (in module cdlib.algorithms)
surprise() (AttrNodeClustering method)
(BiNodeClustering method)
(FuzzyNodeClustering method)
(NodeClustering method)
(in module cdlib.evaluation)
surprise_communities() (in module cdlib.algorithms)
T
TemporalClustering (class in cdlib)
threshold_clustering() (in module cdlib.algorithms)
tiles() (in module cdlib.algorithms)
to_edge_community_map() (EdgeClustering method)
to_json() (AttrNodeClustering method)
(BiNodeClustering method)
(EdgeClustering method)
(FuzzyNodeClustering method)
(NodeClustering method)
(TemporalClustering method)
to_node_community_map() (AttrNodeClustering method)
(BiNodeClustering method)
(FuzzyNodeClustering method)
(NodeClustering method)
topsis() (ComparisonRanking method)
(FitnessRanking method)
triangle_participation_ratio() (AttrNodeClustering method)
(BiNodeClustering method)
(FuzzyNodeClustering method)
(NodeClustering method)
(in module cdlib.evaluation)
U
umstmo() (in module cdlib.algorithms)
V
variation_of_information() (AttrNodeClustering method)
(BiNodeClustering method)
(FuzzyNodeClustering method)
(NodeClustering method)
(in module cdlib.evaluation)
W
walkscan() (in module cdlib.algorithms)
walktrap() (in module cdlib.algorithms)
wCommunity() (in module cdlib.algorithms)
write_community_csv() (in module cdlib.readwrite)
write_community_json() (in module cdlib.readwrite)
X
XMark() (in module cdlib.benchmark)
Z
z_modularity() (AttrNodeClustering method)
(BiNodeClustering method)
(FuzzyNodeClustering method)
(NodeClustering method)
(in module cdlib.evaluation)
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